
   21-Oct-2021 10:58:09 +0200

rootdir = /Volumes/5360/Biophysics/Experiments/dRT-DC/210929_Faruq_2Wildbats/
sampleName = bat1_8nlps_Cold
measNums = 1 2 3 4 5 6 7 
frameNums = 3000 3000 3000 3000 3000 3000 3000 
pixSizeReal = 0.34
pixSizeRec = 0.34
exportMatName = _data_export
firstImageBeforeChannelBegin = 1
lastImageAfterChannelEnd = 1
createResultSubDir = 1
writeStatImages = 1
writeImages = 0
enableFlag = 0
areaRatioFilterLevel = 0.7
areaRatioMax = 1.2
Converting 'M1_2us_70A_0.008000ul_s.tdms'... Conversion complete.
min. 10 cells per sequence: 2492 cell sequences
cell traces covers the whole channel: 1456 cell sequences
load video
load contours
{Error using <a href="matlab:matlab.internal.language.introspective.errorDocCallback('feof')" style="font-weight:bold">feof</a>
Invalid file identifier. Use fopen to generate a valid file identifier.

Error in <a href="matlab:matlab.internal.language.introspective.errorDocCallback('readCellContours', '/Users/faruq/Documents/MATLAB/copied20210421_dRT-DCAnalysis/readCellContours.m', 18)" style="font-weight:bold">readCellContours</a> (<a href="matlab: opentoline('/Users/faruq/Documents/MATLAB/copied20210421_dRT-DCAnalysis/readCellContours.m',18,0)">line 18</a>)
while ~feof(fid)

Error in <a href="matlab:matlab.internal.language.introspective.errorDocCallback('CellPosDeformEval43', '/Users/faruq/Documents/MATLAB/copied20210421_dRT-DCAnalysis/CellPosDeformEval43.m', 181)" style="font-weight:bold">CellPosDeformEval43</a> (<a href="matlab: opentoline('/Users/faruq/Documents/MATLAB/copied20210421_dRT-DCAnalysis/CellPosDeformEval43.m',181,0)">line 181</a>)
[contourData, contourDataIdx] = readCellContours( filedir, measNum, numFrames+10 );
} 
close all

   21-Oct-2021 11:14:50 +0200

rootdir = /Volumes/5360/Biophysics/Experiments/dRT-DC/210929_Faruq_2Wildbats/
sampleName = bat1_8nlps_Cold
measNums = 1 2 3 4 5 6 7 
frameNums = 3000 3000 3000 3000 3000 3000 3000 
pixSizeReal = 0.34
pixSizeRec = 0.34
exportMatName = _data_export
firstImageBeforeChannelBegin = 1
lastImageAfterChannelEnd = 1
createResultSubDir = 1
writeStatImages = 1
writeImages = 0
enableFlag = 0
areaRatioFilterLevel = 0.7
areaRatioMax = 1.2
Converting 'M1_2us_70A_0.008000ul_s.tdms'... Conversion complete.
min. 10 cells per sequence: 2492 cell sequences
cell traces covers the whole channel: 1456 cell sequences
load video
load contours
... and calculate Lambda ratio, volume, surface area
filter for area ratio: excluded cells: 54
write results (1402 cells):
----------
----------
1402 cells written
Converting 'M2_2us_70A_0.008000ul_s.tdms'... Conversion complete.
min. 10 cells per sequence: 2461 cell sequences
cell traces covers the whole channel: 1379 cell sequences
load video
load contours
... and calculate Lambda ratio, volume, surface area
filter for area ratio: excluded cells: 55
write results (1324 cells):
----------
----------
1324 cells written
Converting 'M3_2us_70A_0.008000ul_s.tdms'... Conversion complete.
min. 10 cells per sequence: 2536 cell sequences
cell traces covers the whole channel: 1340 cell sequences
load video
load contours
... and calculate Lambda ratio, volume, surface area
filter for area ratio: excluded cells: 79
write results (1261 cells):
----------
----------
1261 cells written
Converting 'M4_2us_70A_0.008000ul_s.tdms'... Conversion complete.
min. 10 cells per sequence: 2421 cell sequences
cell traces covers the whole channel: 1284 cell sequences
load video
load contours
... and calculate Lambda ratio, volume, surface area
filter for area ratio: excluded cells: 61
write results (1223 cells):
----------
----------
1223 cells written
Converting 'M5_2us_70A_0.008000ul_s.tdms'... Conversion complete.
min. 10 cells per sequence: 2380 cell sequences
cell traces covers the whole channel: 1294 cell sequences
load video
load contours
... and calculate Lambda ratio, volume, surface area
filter for area ratio: excluded cells: 57
write results (1237 cells):
----------
----------
1237 cells written
Converting 'M6_2us_70A_0.008000ul_s.tdms'... Conversion complete.
min. 10 cells per sequence: 2190 cell sequences
cell traces covers the whole channel: 1269 cell sequences
load video
load contours
... and calculate Lambda ratio, volume, surface area
filter for area ratio: excluded cells: 68
write results (1201 cells):
----------
----------
1201 cells written
Converting 'M7_2us_70A_0.008000ul_s.tdms'... Conversion complete.
min. 10 cells per sequence: 2279 cell sequences
cell traces covers the whole channel: 1293 cell sequences
load video
load contours
... and calculate Lambda ratio, volume, surface area
filter for area ratio: excluded cells: 61
write results (1232 cells):
----------
----------
1232 cells written
measurement: /Volumes/5360/Biophysics/Experiments/dRT-DC/210929_Faruq_2Wildbats/bat1_8nlps_Cold/Online/
cell counts:
M#	Th	wholeChannel	areaRatio	written
1	2492	1456	1402	1402
2	2461	1379	1324	1324
3	2536	1340	1261	1261
4	2421	1284	1223	1223
5	2380	1294	1237	1237
6	2190	1269	1201	1201
7	2279	1293	1232	1232

   4-Mar-2022 13:44:29 +0100

rootdir = ..\210929_Faruq_2Wildbats\
sampleName = 210929_Bat1_8nlps_Cold
measNums = 1 2 3 4 5 6 7 
frameNums = 3000 3000 3000 3000 3000 3000 3000 
pixSizeReal = 0.34
pixSizeRec = 0.34
exportMatName = _data_export
firstImageBeforeChannelBegin = 1
lastImageAfterChannelEnd = 1
createResultSubDir = 1
writeStatImages = 1
writeImages = 0
enableFlag = 0
areaRatioFilterLevel = 0.7
areaRatioMax = 1.2
Converting 'M1_2us_70A_0.008000ul_s.tdms'... Conversion complete.
min. 10 cells per sequence: 2492 cell sequences
cell traces covers the whole channel: 1477 cell sequences
load video
load contours
... and calculate Lambda ratio, volume, surface area
filter for area ratio: excluded cells: 55
write results (1422 cells):
----------
----------
1422 cells written
Converting 'M2_2us_70A_0.008000ul_s.tdms'... Conversion complete.
min. 10 cells per sequence: 2461 cell sequences
cell traces covers the whole channel: 1404 cell sequences
load video
load contours
... and calculate Lambda ratio, volume, surface area
filter for area ratio: excluded cells: 58
write results (1346 cells):
----------
----------
1346 cells written
Converting 'M3_2us_70A_0.008000ul_s.tdms'... Conversion complete.
min. 10 cells per sequence: 2536 cell sequences
cell traces covers the whole channel: 1342 cell sequences
load video
load contours
... and calculate Lambda ratio, volume, surface area
filter for area ratio: excluded cells: 79
write results (1263 cells):
----------
----------
1263 cells written
Converting 'M4_2us_70A_0.008000ul_s.tdms'... Conversion complete.
min. 10 cells per sequence: 2421 cell sequences
cell traces covers the whole channel: 1282 cell sequences
load video
load contours
... and calculate Lambda ratio, volume, surface area
filter for area ratio: excluded cells: 62
write results (1220 cells):
----------
----------
1220 cells written
Converting 'M5_2us_70A_0.008000ul_s.tdms'... Conversion complete.
min. 10 cells per sequence: 2380 cell sequences
cell traces covers the whole channel: 1300 cell sequences
load video
load contours
... and calculate Lambda ratio, volume, surface area
filter for area ratio: excluded cells: 57
write results (1243 cells):
----------
----------
1243 cells written
Converting 'M6_2us_70A_0.008000ul_s.tdms'... Conversion complete.
min. 10 cells per sequence: 2190 cell sequences
cell traces covers the whole channel: 1272 cell sequences
load video
load contours
... and calculate Lambda ratio, volume, surface area
filter for area ratio: excluded cells: 68
write results (1204 cells):
----------
----------
1204 cells written
Converting 'M7_2us_70A_0.008000ul_s.tdms'... Conversion complete.
min. 10 cells per sequence: 2279 cell sequences
cell traces covers the whole channel: 1293 cell sequences
load video
load contours
... and calculate Lambda ratio, volume, surface area
filter for area ratio: excluded cells: 61
write results (1232 cells):
----------
----------
1232 cells written
measurement: ..\210929_Faruq_2Wildbats\210929_Bat1_8nlps_Cold\Online\
cell counts:
M#	Th	wholeChannel	areaRatio	written
1	2492	1477	1422	1422
2	2461	1404	1346	1346
3	2536	1342	1263	1263
4	2421	1282	1220	1220
5	2380	1300	1243	1243
6	2190	1272	1204	1204
7	2279	1293	1232	1232
